Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015912555.1_cds_XP_016462638.1_55847
CDS Infomation

[gene=LOC107785780] [db_xref=GeneID:107785780] [protein=probable pectate lyase 12] [protein_id=XP_016462638.1] [location=join(20820..20953,22037..22949,23825..24027,24877..25102)] [gbkey=CDS]
Sequence

ATGTTCCAAAGAAGCTGCATTGTGATTTTCTTGCTTTTAACCTCATTTTTTCACTTTGGT
TTGGGGATGTACATGAACCTTACTCTTCCTGGTCAGCATCCTGATCCTGAAGCTGTTGCT
CTTGAAGTTAATAGAAAAGTTAATGTATCACTCTCAATGCTCCAAACAAGAAGGAAAATG
TTGTCCTACACCTCTAGTGATCAATCTTGCCAAACTGGTAACCCTATAGATGATTGTTGG
AGATGTGACCATAATTGGCAATTAAATCGCCAAAGACTAGCCGATTGTGCCATAGGTTTT
GGCCAATACGCCTTAGGTGGGAAAGGTGGTCGTTACTATGTTGTCACCTCGTCCTCGGAC
CCTGACCCTGTTAACCCGCCACCTGGCACTCTCCGATACGGCGTCATTCAAGAAGAACCG
TTATGGATCGTCTTTGCAGCCAACATGGAAATCAAACTCTCAGAAGAACTCATTTTCAAC
TCGTTCAAAACCCTAGATGGTCGCGGAGTTAACGTTCATATTACTGGTGGAGGGTGCGTA
ACGTTACAATATATTTCAAACGTTATTATTCATAATATTCATATACATCATTGTTATGAA
TCTGGTGAAACTAATATAAGATCTAGTCCTACACATTTTGGTTGGAGAACAAAATCAGAT
GGAGATGGAATTTCTATATTTGGATCAAGAGATATTTGGATTGACCATTGTTCATTATCA
AATTGTAAAGATGGTTTAATTGATGTAGTAATGGGGTCCACTGGTATTACAATTTCAAAT
AATCATTTTTCACATCATAATGAGGTAATGTTATTAGGACATAGTGATGATTATTTGCCA
GATTCAGGAATGCAAGTGACAATTTCTTTTAATCATTTTGGGAAGAAATTAATTCAGAGA
ATGCCAAGGTGTAGAAGAGGTTATATTCATGTTGTGAATAATGATTTCACAAGGTGGGAA
ATGTATGCAATTGGAGGAAGTGGTAATCCTACTATCAACAGTCAAGGAAATCGCTACATT
GCACCTTTCAACCCTTTTGCTAAAGAGGTAACAAAAAGAGTGGAGACAGGAGAAGAAAAA
TGGAGGAATTGGAATTGGAGAAGTGAAGGGGATGTAATGGCAAATGGAGCATACTTTGTG
GCCTCAGGTGAAGGAGTTGAAGTTAAATATGAGAAGGCTTATAGTGTGGAGCCCAAATCT
GCTGATTTCATTGACCAAATTACAATGAATGCTGGTGTTCTTATTCACAGGGGAAGCAAC
AGTGGTAAATGGACTGCTGCCACCAATGACACCGACGGCGCGGTGGACGGCGGCGGAGAA
GATTTGGTGGCGATTTCCGGCGACGCAGAAGACTATGATGGTGATGAAGAGTCAGGGAGC
TTTACACTTTACTCTAACTCTTTGTTATTTACTTGTCTTATGGCATTGTTAGCCTTCTTG
TTTATTCATGTCAAAGTAACAACCATGCTTTTGTAG

Peptide Sequence

PEP ID

XP_016462638.1
PEP Infomation

PREDICTED: probable pectate lyase 12 [Nicotiana tabacum]
Sequence

MFQRSCIVIFLLLTSFFHFGLGMYMNLTLPGQHPDPEAVALEVNRKVNVSLSMLQTRRKM
LSYTSSDQSCQTGNPIDDCWRCDHNWQLNRQRLADCAIGFGQYALGGKGGRYYVVTSSSD
PDPVNPPPGTLRYGVIQEEPLWIVFAANMEIKLSEELIFNSFKTLDGRGVNVHITGGGCV
TLQYISNVIIHNIHIHHCYESGETNIRSSPTHFGWRTKSDGDGISIFGSRDIWIDHCSLS
NCKDGLIDVVMGSTGITISNNHFSHHNEVMLLGHSDDYLPDSGMQVTISFNHFGKKLIQR
MPRCRRGYIHVVNNDFTRWEMYAIGGSGNPTINSQGNRYIAPFNPFAKEVTKRVETGEEK
WRNWNWRSEGDVMANGAYFVASGEGVEVKYEKAYSVEPKSADFIDQITMNAGVLIHRGSN
SGKWTAATNDTDGAVDGGGEDLVAISGDAEDYDGDEESGSFTLYSNSLLFTCLMALLAFL
FIHVKVTTMLL

Transcript Sequence

Gene sequence data has not been registered.